J Gregory Caporaso

J Gregory Caporaso Ph.D.

Pathogen and Microbiome Division

Department of Biological Sciences, Northern Arizona University; Director, Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University

J Gregory Caporaso Ph.D.

Dr. Caporaso is a microbiome researcher and bioinformatics software engineer. He leads the QIIME 2 project (https://qiime2.org), the widely used and highly cited microbiome data science platform. In addition to his focus on designing, engineering, and teaching accessible and cutting edge computational tools for reproducible microbiome bioinformatics, his lab is interested in applications of microbiome science in cancer prevention, cancer treatment, and environmental sustainability.

Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay. Keefe CR, Dillon MR, Gehret E, Herman C, Jewell M, Wood CV, Bolyen E, Caporaso JG. PLoS Compt Biol. 2023;19(11):e1011676.

The Oral Microbiome and Lung Cancer Risk: An Analysis of 3 Prospective Cohort Studies. Vogtmann E, Hua X, Yu G, ..., Caporaso JG, ..., Abnet CC. JNCI-J Natl Cancer I. 2022;114(11):1501–1510.

Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment. Bokulich NA, Łaniewski P, Adamov A, Chase DM, Caporaso JG, Herbst-Kralovetz MM. PLoS Compt Biol. 2022;18(2):e1009887.

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. Dillon MR, Bolyen E, Adamov A, ..., Caporaso JGPLoS Compt Biol. 2021;17(16):e1009056.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Bolyen E, Rideout JR, Dillon MR, ..., Caporaso JGNat. Biotechnol. 2019;37:852–857.


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