Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay. Keefe CR, Dillon MR, Gehret E, Herman C, Jewell M, Wood CV, Bolyen E, Caporaso JG. PLoS Compt Biol. 2023;19(11):e1011676.
The Oral Microbiome and Lung Cancer Risk: An Analysis of 3 Prospective Cohort Studies. Vogtmann E, Hua X, Yu G, ..., Caporaso JG, ..., Abnet CC. JNCI-J Natl Cancer I. 2022;114(11):1501–1510.
Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment. Bokulich NA, Łaniewski P, Adamov A, Chase DM, Caporaso JG, Herbst-Kralovetz MM. PLoS Compt Biol. 2022;18(2):e1009887.
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. Dillon MR, Bolyen E, Adamov A, ..., Caporaso JG. PLoS Compt Biol. 2021;17(16):e1009056.
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Bolyen E, Rideout JR, Dillon MR, ..., Caporaso JG. Nat. Biotechnol. 2019;37:852–857.
