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SELECTED PUBLICATIONS
Barragan, V., S. Olivas, P. Keim, and T. Pearson. 2017. Critical knowledge gaps in our understanding about environmental cycling and transmission of Leptospira. Appl. Environ. Microbiol.
Sahl, J. W., T. Pearson, R. Okinaka, J. M. Schupp, J. D. Gillece, H. Heaton, D. Birdsell, C. Hepp, V. Fofanov, R. Noseda, A. Fasanella, A. Hoffmaster, D. M. Wagner, and P. Keim. 2016. A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens. MBio 7.
Barragan, V., J. Chiriboga, E. Miller, S. Olivas, D. Birdsell, C. Hepp, H. Hornstra, J. M. Schupp, M. Morales, M. Gonzalez, S. Reyes, C. de la Cruz, P. Keim, R. Hartskeerl, G. Trueba, and T. Pearson. 2016a. High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador. PLoS Negl Trop Dis 10:e0004990.
Olivas, S., H. Hornstra, R. A. Priestley, E. Kaufman, C. Hepp, D. L. Sonderegger, K. Handady, R. F. Massung, P. Keim, G. J. Kersh, and T. Pearson. 2016. Massive dispersal of Coxiella burnetii among cattle across the United States. Microbial Genomics.
Pearson, T., J. H. Cocking, H. M. Hornstra, and P. Keim. 2016. False detection of Coxiella burnetii—what is the risk? FEMS Microbiology Letters 363:fnw088.
Keim, P., R. Grunow, R. Vipond, G. Grass, A. Hoffmaster, D. N. Birdsell, S. R. Klee, S. Pullan, M. Antwerpen, B. N. Bayer, J. Latham, K. Wiggins, C. Hepp, T. Pearson, T. Brooks, J. Sahl, and D. M. Wagner. 2015. Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years. EBioMedicine.
Eppinger, M., T. Pearson, S. S. Koenig, O. Pearson, N. Hicks, S. Agrawal, F. Sanjar, K. Galens, S. Daugherty, J. Crabtree, R. S. Hendriksen, L. B. Price, B. P. Upadhyay, G. Shakya, C. M. Fraser, J. Ravel, and P. S. Keim. 2014. Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic. MBio 5:e01721.
Pearson, T., H. M. Hornstra, J. W. Sahl, S. Schaack, J. M. Schupp, S. M. Beckstrom-Sternberg, M. W. O'Neill, R. A. Priestley, M. D. Champion, J. S. Beckstrom-Sternberg, G. J. Kersh, J. E. Samuel, R. F. Massung, and P. Keim. 2013. When outgroups fail; phylogenomics of rooting the emerging pathogen, Coxiella burnetii. Syst Biol 62:752-762.
Price, E. P., D. S. Sarovich, M. Mayo, A. Tuanyok, K. P. Drees, M. Kaestli, S. M. Beckstrom-Sternberg, J. S. Babic-Sternberg, T. J. Kidd, S. C. Bell, P. Keim, T. Pearson, and B. J. Currie. 2013. Within-host evolution of Burkholderia pseudomallei over a twelve-year chronic carriage infection. MBio 4.
Price, L. B., M. Stegger, H. Hasman, M. Aziz, J. Larsen, P. S. Andersen, T. Pearson, A. E. Waters, J. T. Foster, J. Schupp, J. Gillece, E. Driebe, C. M. Liu, B. Springer, I. Zdovc, A. Battisti, A. Franco, J. Zmudzki, S. Schwarz, P. Butaye, E. Jouy, C. Pomba, M. C. Porrero, R. Ruimy, T. C. Smith, D. A. Robinson, J. S. Weese, C. S. Arriola, F. Yu, F. Laurent, P. Keim, R. Skov, and F. M. Aarestrup. 2012. Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock. MBio 3.
Pearson, T., P. Giffard, S. Beckstrom-Sternberg, R. Auerbach, H. Hornstra, A. Tuanyok, E. P. Price, M. B. Glass, B. Leadem, J. S. Beckstrom-Sternberg, G. J. Allan, J. T. Foster, D. M. Wagner, R. T. Okinaka, S. H. Sim, O. Pearson, Z. Wu, J. Chang, R. Kaul, A. R. Hoffmaster, T. S. Brettin, R. A. Robison, M. Mayo, J. E. Gee, P. Tan, B. J. Currie, and P. Keim. 2009b. Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol 7:78.
Pearson, T., J. D. Busch, J. Ravel, T. D. Read, S. D. Rhoton, J. M. U'Ren, T. S. Simonson, S. M. Kachur, R. R. Leadem, M. L. Cardon, M. N. Van Ert, L. Y. Huynh, C. M. Fraser, and P. Keim. 2004. Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proc Natl Acad Sci U S A 101:13536-13541.